Building Latin America’s phage network: a journey to Phage Option 2024

Issue 278 | August 23, 2024
11 min read
Capsid and Tail

Join Phage Option 2024: the Third Latin American Bacteriophage Conference in Cartagena, Colombia, December 4-6, 2024. Hosted at the Universidad de los Andes, Caribbean Campus.

‘Phage Option 2024’ in Cartagena, Colombia is happening this December! This week we learn the story of its organizers, a group of mostly female Latin American scientists, and how they’ve advanced phage science by forming networks and hosting courses and conferences over the past 9 years.

Sponsor

Eligo We are Hiring banner

Attention phage scientists seeking their next awesome role! Eligo Bioscience (Paris, France) is recruiting for several positions!

At Eligo, we are passionate about developing new drugs to address microbiome-associated unmet medical needs, as highlighted by our recent publication in Nature.

To join our team and bring our exciting technology to the clinic, we are currently seeking:

• A Senior biochemist scientist to perform phage-derived particles manufacturing and process development
• A Microbial synthetic biologist to engineer non-model bacteria and phages
• A Bioinformatics scientist to help characterize target bacteria and improve the design of our phage particles

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What’s New

Katrine Whiteson (University of California, Irvine) has been awarded a Pilot Program grant for phage therapy research by the Susan Samueli Integrative Health Institute to develop and refine phage therapy protocols for treating antibiotic-resistant infections.

Phage therapyGrant funding news

Yuval Mulla (University of Cologne) and colleagues quantified phage amplification rates using a mathematical model called PHORCE, showing that amplification rates of E. coli phages vary widely and that phage-antibiotic interactions depend primarily on the antibiotic type.

Phage amplificationphage-antibiotic interactionsPreprint

Stephen Tang (Columbia University) and colleagues described de novo gene synthesis by an antiviral reverse transcriptase, showing a novel approach to gene synthesis.

De novo gene synthesisReverse transcriptaseResearch paper

Adrián Cortés-Martín (University College Cork) and colleagues published a new paper on isolation and characterization of Septuagintavirus, showing a novel clade of Escherichia coli phages within the subfamily Vequintavirinae.

Research paperTaxonomy

Célia Souque (Harvard Medical School) and colleagues published a new paper reviewing evolutionary mechanisms driving antibiotic resistance at different scales.

Research paperEvolutionary biologyAMR

Latest Jobs

Phage isolationbioinformaticsPostdoc
Archana Anand has announced that the BRaVE Phage Foundry at Lawrence Berkeley National Laboratory is hiring postdocs and research assistants. The team is particularly interested in candidates with a passion for viruses, wastewater research, and bioinformatics.
Phage therapymicrobiologyInternship
Tolka AI Therapeutics (now backed by Khosla Ventures!) is a biotech startup in Miami, Florida focused on developing phage therapy for M. abscessus infections. Tolka is hiring a Microbiology Intern to assist in phage hunting and developing treatments for antibiotic-resistant infections.
MicrobiologyPhage-host interactionsPhD Position
Friedrich Schiller University Jena is hiring a PhD student to study phage-host interactions and single-cell transcriptomics in microbial infections.
PhageMicrobiologyPostdoc
The University of Otago is hiring a postdoc to contribute to phage-based biocontrol research for agricultural pathogens in Dunedin, New Zealand.
Senior Research AssistantAntimicrobial resistancePlasmid therapy
The Westmead Institute for Medical Research is hiring a Senior Research Assistant to assist in developing therapeutic plasmids targeting antimicrobial resistance in bacteria.

Community Board

Anyone can post a message to the phage community — and it could be anything from collaboration requests, post-doc searches, sequencing help — just ask!

In episode 2 of the Podovirus podcast, ‘Getting Phage Research Funded’, Jessica Sacher interviews Dr. Joe Campbell, who spent the past decade+ as a program officer at NIAID, the US gov’s main infectious disease funding body.

Dr. Campbell reflects on his role in making it easier for phage research to get NIH funding, and shares his perspective on what’s next for the field, including the growing importance of phage therapy centers like Phage Australia and Phage Canada.

Subscribe to Podovirus to get the next one, which will be an interview with Dr. Jesus Fernandez of Eligo Bioscience about their recent paper on microbiome editing with engineered lambda phage!

PodcastGrant FundingPhage therapy

Daria Van Tyne (University of Pittsburgh) received a $70K grant to optimize phage therapy for Burkholderia spp. infections, showing potential advancements in treating cystic fibrosis patients. Also, Daria has just been promoted to Associate Professor! Congrats Daria!!

Microbial GenomicsGrant fundingCareer

Dr. Siân Owen was interviewed the You Make Me Sick podcast about her work using experimental evolution and computational approaches to study AMR bacteria and phages during her postdoc at the Baym Lab at Harvard Medical School. She announced she’s now starting her own lab at the Wadsworth Center in Albany, New York — congrats Siân!!

CareerEvolutionary biologyPodcast

Building Latin America’s phage network: a journey to Phage Option 2024

Profile Image
LecturerPostdoctoral ResearcherResearch AssistantResearcher
Molecular Virology Lab, Molecular Virology Lab Facultad de Ciencias UDELAR
Skills

Molecular Biology, Phage isolation, Teaching, Microbiology, characterization of phages, cloning / bacterial screens / lenti / TC

I recently started my first independent line of research on phages important in the control of human pathogens. I did my bachelor’s and master’s thesis on bacterial antibiotic resistance and later my PhD thesis on hepatitis C virus genetic diversity and translational attenuation. I’m looking for collaborations in bioinformatics as well as research exchange opportunities.

Profile Image
Assistant professor
Dacil-Chilephage, UNAB
Skills

Phage Therapy, Biotechnology, Phage isolation, Phage-host interactions

Hello
My name is Dacil Rivera. I am a young researcher from Chile. I have worked isolating and characterizing Salmonella and Xanthomonas phages.

Profile Image
Chief of Research
Sciphage, Bogota, Colombia
Skills

Phage-host interactions, Molecular Biology, Phage isolation, Biotechnology, Microbiology

Inaugural International Course on Bacteriophages in Argentina

The Latin American phage community would not be possible without the support and incentive of the great Betty Kutter. It all started in 2011 at the Evergreen Bacteriophage Conference when Betty encouraged the network of bacteriophage scientists from Latin America by introducing Mariana Piuri (University of Buenos Aires, Argentina) to Martha Vives (Universidad de Los Andes, Colombia), giving rise to the Latin American bacteriophage community that has only grown from that moment on. Only one year before, in 2010, Martha Vives had organized the first Colombian Phage and Phage Therapy meeting, with great invited speakers, among which was Betty. This meeting was, to the best of our knowledge, the first ever phage meeting in our continent.

Inspired by her postdoctoral years in Graham Hatfull’s lab and the Phage Hunters Program, Mariana Piuri (Figure 1), together with Raúl Raya from CERELA Institute in Argentina, who had worked with Betty at Evergreen State College, organized the first International Course on Bacteriophages at the Faculty of Exact Sciences of the University of Buenos Aires (UBA, Argentina) in 2015.

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Figure 1. Mariana Piuri observing a petri dish showing extensive phage-derived lysis (2024 course edition)

The primary goal of this course was to boost interest in phage research and foster a collaborative network within Latin America. It also aimed to facilitate interactions between students and internationally acclaimed professors. It was an excellent opportunity to enhance connections between Latin American and international laboratories in the bacteriophage field, fostering new collaborations and scientific exchanges. This course was an intensive 80-hour program comprising lectures and hands-on laboratory sessions (Figure 2), both wet and dry. Participants isolated and characterized bacteriophages from Mycobacterium and Lactobacillus genera found in soil and raw milk samples, followed by comprehensive bioinformatic analyses.

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Figure 2. Lecture session (top panel) and wet-lab session from the Latin American bacteriophage course, 2022 edition.

Students from most countries in Latin America have enrolled in the course (Argentina, Bolivia, Brazil, Chile, Colombia, Costa Rica, Cuba, Ecuador, Guatemala, Mexico, Panama, Paraguay, Peru, Uruguay, and Venezuela). Most of them were PhD students, but also postdocs and both young and senior investigators, and people belonging to phage companies. In fact, this article’s authors have all participated in different editions of the aforementioned international course (Natalia Echeverría from Uruguay, in 2015; Dácil Rivera, from Chile, in 2016; and Santiago Hernández, from Colombia as well as Florencia Payaslián, from Argentina, in 2017), and are currently engaged in phage research in academia and/or industry.

Course success and prestigious phage experts’ participation

The success of the first course in 2015 led to its repetition in subsequent years, including 2016, 2017, 2019, 2022, and 2024. 2022 Edition was the most attended one and included 35 students (Figure 3). Additionally, the course included lectures from several esteemed international bacteriophage experts who provided the program with high-quality presentations over the years (Graham Hatfull - University of Pittsburgh, USA; Bas Duthil - Utrecht University, Netherlands; University of Rio de Janeiro, Brazil; Martha Vives - Universidad de Los Andes, Colombia; Andrea Quiberoni - INLAIN, Argentina; Sylvain Moineau - Laval University, Canada; Ramy Aziz - Cairo University, Egypt; Peter Fineran - University of Otago, New Zealand; Martin Loessner - ETH Zurich, Switzerland; Leticia Bentancor - UNQui, Argentina; Vanina Grippo - ICT Milstein, Argentina; Leonardo Erijman - INGEBI, Argentina; Martha Clokie - University of Leicester, UK; Nicholas Taylor - University of Copenhagen, Denmark; Joana Azeredo - Minho University, Portugal; Alejandro Reyes - Universidad de los Andes, Colombia; Nancy Lopez and Adrián Turjanski - UBA, Argentina).

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Figure 3. 2022 course edition’s participants. In the front row are the course organizers and lecturers (from left to right: Mariana Piuri, Alejandro Reyes, Martha Clokie, and Martha Vives)

The Argentinian Network of Bacteriophages and the first Latin American Phage Meetings in Buenos Aires

Furthermore, in 2019 the Argentinian Network of Bacteriophages was established, bringing together bacteriophage laboratories across Argentina. The network’s objective is to strengthen the national phage community and enhance collaborations with other laboratories and groups from Latin America. In light of these developments, the First Latin American Phage Meeting was held in Buenos Aires that same year. This event was the first bacteriophage meeting held in the region, congregating research scientists and phage companies from all over Latin America. In 2022, the Second Latin American Phage Meeting was held again in Buenos Aires, with more than 120 participants (Figure 4). Both meetings were course-associated events that featured prominent international lecturers such as Martin Loessner, Alejandro Reyes, Maite Muniesa, Martha Vives, and Martha Clokie.

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Figure 4. Second Latin American Phage Meeting’s organizers from Argentina (from left to right: Mariana Piuri, Alejandra Kruger - Centro De Investigacion Veterinaria De Tandil, and Leticia Bentancor - Universidad Nacional de José C. Paz; not present: Paula Luchesi - Centro De Investigacion Veterinaria De Tandil).

Coming soon: Phage Option 2024 - 3rd Latin American Phage meeting

The bacteriophage field has witnessed a surge in recent years, with the research community in Latin America playing a pivotal role in the advancement of phage therapy alternatives and the development of phage-derived biotechnological tools to address regional challenges in resource-limited settings. Training and the establishment of a robust network are of paramount importance to achieving these objectives.

With these goals in mind, the 3rd Latin American Phage Meeting is being organized, this time at the Caribbean location of the Universidad de los Andes, in Cartagena, Colombia (December 4th to 6th, 2024). In addition to the previously invited speakers (Dr. Martha Vives, Dr. Mariana Piuri, and Dr. Alejandro Reyes), other influential voices at the forefront of human, animal, and plant health will be participating, including Dr. Alexander “Sandro” Sulakvelidze (President and CEO Intralytix, Inc), Sofía Corte-Real (CSO and Deputy CEO Technophage), PhD© Juan Camilo Farfán (Departamento de Ciencias Biológicas, Universidad de los Andes), Dr. Frenk Smrekar (CEO JAFRAL), Dr. Jessica Sacher (Staff Scientist, Bollyky Lab, Stanford University, and co-creator of Phage Directory), Dr. Krystyna Dąbrowska (Phage Molecular Biology Lab, Institute of Immunology and Experimental Therapy, Polish Academy of Sciences), Dr. Sandra Morales (Managing director of Phage Consulting Pty Ltd), Dr. Pilar Donado (Corporación Colombiana de Investigación Agropecuaria AGROSAVIA), and Dr. Viviana Clavijo (CEO Sciphage S.A.S).

Moreover, on this occasion, Phage Option would also like to involve physicians and veterinarians in the meeting to promote the use of bacteriophages in human and animal health in Latin America. For this reason, the organizers are extending the invitation to the medical community.

If any Latin American (or international) phage enthusiast is hoping to attend, please bear in mind the deadline for abstract submission is September 10th, 2024. Discounted registration fees are available before September 30th. For information on topics included, registration fees, and more, please visit

https://ciencias.uniandes.edu.co/eventos/56-eventos/643-phage-option-2025-english-version

We all hope to see you there!

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